src

• src package
  • Submodules
  • src.classification module
    • label_clustered_data()
    • prepare_training_data_splits()
    • train_classifier()
    • evaluate_classifier()
    • get_feature_importances()
    • predict_wound_border_type()
  • src.clustering module
    • apply_pacmap()
    • perform_hdbscan_clustering()
  • src.config_manager module
    • Config
      • Config.config_filepath
      • Config.data
      • Config.get()
      • Config.get_paths()
      • Config.get_filtering_params()
      • Config.get_feature_extraction_params()
      • Config.get_clustering_params()
      • Config.get_classification_params()
      • Config.get_subdirs_params()
      • Config.get_descriptive_labels()
  • src.data_loader module
    • data_loader()
    • load_and_clean_features()
    • load_cluster_groups()
  • src.feature_extraction module
    • calculate_depth_profiles()
    • r_squared()
    • linear_func()
    • sigmoid_func()
    • get_spectral_features()
    • get_statistical_features()
    • butter_lowpass_filter()
    • extract_features_from_profile()
  • src.logging_setup module
    • setup_logging()
  • src.plotting module
    • plot_initial_data()
    • show_unrolled_strip()
    • plot_depth_profile()
    • plot_profiles_and_fits()
    • plot_embedding()
    • plot_clusters()
    • plot_feature_distributions_by_cluster()
    • plot_cluster_image_grid()
    • plot_confusion_matrix()
    • plot_feature_importances()
  • src.preprocessing module
    • validate_wound_masks()
    • zscore_filter()
    • quad_surface()
    • depth_corrction_for_body_curvature()
    • sample_pixels_from_contour()
    • unroll_periwound_to_image()
  • src.utils module
    • save_dataframe_to_csv()
    • save_features_to_csv()
    • save_cluster_assignments()
    • generate_cluster_summary()
    • generate_cluster_profiles()
  • Module contents