Index A | B | C | D | E | G | L | M | P | Q | R | S | T | U | V | Z A apply_pacmap() (in module src.clustering) B butter_lowpass_filter() (in module src.feature_extraction) C calculate_depth_profiles() (in module src.feature_extraction) Config (class in src.config_manager) config_filepath (src.config_manager.Config attribute) D data (src.config_manager.Config attribute) data_loader() (in module src.data_loader) depth_corrction_for_body_curvature() (in module src.preprocessing) E evaluate_classifier() (in module src.classification) extract_features_from_profile() (in module src.feature_extraction) G generate_cluster_profiles() (in module src.utils) generate_cluster_summary() (in module src.utils) get() (src.config_manager.Config method) get_classification_params() (src.config_manager.Config method) get_clustering_params() (src.config_manager.Config method) get_descriptive_labels() (src.config_manager.Config method) get_feature_extraction_params() (src.config_manager.Config method) get_feature_importances() (in module src.classification) get_filtering_params() (src.config_manager.Config method) get_paths() (src.config_manager.Config method) get_spectral_features() (in module src.feature_extraction) get_statistical_features() (in module src.feature_extraction) get_subdirs_params() (src.config_manager.Config method) L label_clustered_data() (in module src.classification) linear_func() (in module src.feature_extraction) load_and_clean_features() (in module src.data_loader) load_cluster_groups() (in module src.data_loader) M module src src.classification src.clustering src.config_manager src.data_loader src.feature_extraction src.logging_setup src.plotting src.preprocessing src.utils P perform_hdbscan_clustering() (in module src.clustering) plot_cluster_image_grid() (in module src.plotting) plot_clusters() (in module src.plotting) plot_confusion_matrix() (in module src.plotting) plot_depth_profile() (in module src.plotting) plot_embedding() (in module src.plotting) plot_feature_distributions_by_cluster() (in module src.plotting) plot_feature_importances() (in module src.plotting) plot_initial_data() (in module src.plotting) plot_profiles_and_fits() (in module src.plotting) predict_wound_border_type() (in module src.classification) prepare_training_data_splits() (in module src.classification) Q quad_surface() (in module src.preprocessing) R r_squared() (in module src.feature_extraction) S sample_pixels_from_contour() (in module src.preprocessing) save_cluster_assignments() (in module src.utils) save_dataframe_to_csv() (in module src.utils) save_features_to_csv() (in module src.utils) setup_logging() (in module src.logging_setup) show_unrolled_strip() (in module src.plotting) sigmoid_func() (in module src.feature_extraction) src module src.classification module src.clustering module src.config_manager module src.data_loader module src.feature_extraction module src.logging_setup module src.plotting module src.preprocessing module src.utils module T train_classifier() (in module src.classification) U unroll_periwound_to_image() (in module src.preprocessing) V validate_wound_masks() (in module src.preprocessing) Z zscore_filter() (in module src.preprocessing)